Published in The Plant Journal, 2026
van Workum, D.J.M., van den Bergh, E.S., Shetty, S.S., van Lieshout, J., Feng, T., Alderkamp, M.C., Flores Andaluz, G., Pauls, A., Mulder, F.F.M., Lapin, D., Aarts, M.G.M., Van den Ackerveken, G., Offringa, R., Pierik, R., Proveniers, M., Schranz, M.E., Smit. S., Heidstra, R., Horstman, A. (2026). The Lettuce Expression Browser: from lab to LEB. The Plant Journal, 1265, e70962.
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Published in NAR Genomics and Bioinformatics, 2026
van Workum, D.J.M., Dey, K.K., Kozik, A. Lavelle, D.O., de Ridder, D., Schranz, M.E., Michelmore, R.W., Smit, S. (2026). MoGAAAP: a modular Snakemake workflow for automated genome assembly and annotation with quality assessment. NAR Genomics and Bioinformatics, 8(1), lqag008.
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Published in Computer Graphics Forum, 2025
van den Brandt, A., Ståhlbom, E., van Workum, F.J.M., van de Wetering, H., Lundström, C., Smit, S. and Vilanova, A. (2025), Multipla: Multiscale Pangenomic Locus Analysis. Computer Graphics Forum, e70147.
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Published in BMC Plant Biology, 2024
van Workum, D.J.M., Mehrem, S.L., Snoek, B.L., Alderkamp, M.C., Lapin, D., Mulder, F.F., ... & Smit, S. (2024). Lactuca super-pangenome reduces bias towards reference genes in lettuce research. BMC Plant Biology, 24(1), 1019.
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Published in G3 Genes|Genomes|Genetics, 2023
Xiong, W.*, van Workum, D.J.M.*, Berke, L., Bakker, L.V., Schijlen, E., Becker, F.F., ... & Schranz, M.E. (2023). Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding. G3: Genes, Genomes, Genetics, 13(11), jkad204.
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Published in The Plant Journal, 2023
Xiong, W., Berke, L., Michelmore, R., van Workum, D.J.M., Becker, F.F., Schijlen, E., ... & Schranz, M.E. (2023). The genome of Lactuca saligna, a wild relative of lettuce, provides insight into non‐host resistance to the downy mildew Bremia lactucae. The Plant Journal, 115(1), 108-126.
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Published in BMC Biology, 2022
Barten, R., van Workum, D.J.M., de Bakker, E., Risse, J., Kleisman, M., Navalho, S., ... & Barbosa, M.J. (2022). Genetic mechanisms underlying increased microalgal thermotolerance, maximal growth rate, and yield on light following adaptive laboratory evolution. BMC biology, 20(1), 242.
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Published in Bioinformatics, 2022
Jonkheer, E.M., van Workum, D.J.M., Sheikhizadeh Anari, S., Brankovics, B., de Haan, J.R., Berke, L., ... & Smit, S. (2022).PanTools v3: functional annotation, classification and phylogenomics. Bioinformatics, 38(18), 4403-4405.
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Published in Genome Assembly. Humana, New York, NY., 2025
Papastolopoulou, C., Yang, Z., van Workum, F.J.M., Wijfjes, R.Y., Smit, S. High-Quality Plant Genomes for and through Pangenomics. In: Genome Assembly. Methods in Molecular Biology, vol 2955. Humana, New York, NY.
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Published in IEEE, 2023
van den Brandt, A., Jonkheer, E.M., van Workum, D.J.M., van de Wetering, H., Smit, S., & Vilanova, A. (2023). Panva: Pangenomic variant analysis. IEEE Transactions on Visualization and Computer Graphics.
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Published in Wageningen University & Research, 2026
van Workum, D.J.M. (2026). Genetic variation in the lettuce pangenome. [Doctoral dissertation, Wageningen University & Research].
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